PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73165
Common NameSELMODRAFT_73143
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 56aa    MW: 6489.37 Da    PI: 11.3695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73165genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-19150356
    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
           ++GVr+++ +g+++AeIrdp++   + r +lg+f tae+Aa a++ a+++++g+
  73165  1 FRGVRRRP-WGKFAAEIRDPKT---KERRWLGTFETAEDAAMAYDLAARAMRGA 50
           79******.**********954...4999***********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-12149IPR001471AP2/ERF domain
PROSITE profilePS5103222.392156IPR001471AP2/ERF domain
PRINTSPR003673.5E-10112IPR001471AP2/ERF domain
CDDcd000186.30E-24156No hitNo description
SMARTSM003801.8E-27156IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22156IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-30156IPR001471AP2/ERF domain
PRINTSPR003673.5E-102339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
FRGVRRRPWG KFAAEIRDPK TKERRWLGTF ETAEDAAMAY DLAARAMRGA DARTNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21156662ATERF1
3gcc_A3e-21156662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978506.14e-33hypothetical protein SELMODRAFT_73143, partial
SwissprotQ9FYK54e-28ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLD8S4V14e-33D8S4V1_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ204921e-32(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-18ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]